PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G143700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB
Protein Properties Length: 237aa    MW: 27522.3 Da    PI: 8.8145
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G143700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-181360148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd ll+++++++G g+W++++ + g++R++k+c++rw++yl
  Aqcoe6G143700.1.p 13 KGAWTEEEDTLLKRCIEKHGEGNWHKVPLRAGLNRCRKSCRLRWFNYL 60
                       79********************************************97 PP

2Myb_DNA-binding48.91.5e-1566110147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r  ++ +E +l+++ +k+lG++ W++Ia++++ gRt++++k+rw+++
  Aqcoe6G143700.1.p  66 REEFSWDEIDLIIKMHKLLGNR-WSLIAARLP-GRTANDIKNRWNTH 110
                        6789******************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-23563IPR009057Homeodomain-like
PROSITE profilePS5129425.514864IPR017930Myb domain
SuperFamilySSF466895.87E-2911107IPR009057Homeodomain-like
SMARTSM007172.6E-161262IPR001005SANT/Myb domain
PfamPF002491.1E-171360IPR001005SANT/Myb domain
CDDcd001672.24E-111560No hitNo description
Gene3DG3DSA:1.10.10.608.2E-2264115IPR009057Homeodomain-like
SMARTSM007171.0E-1465113IPR001005SANT/Myb domain
PROSITE profilePS5129418.46365115IPR017930Myb domain
PfamPF002492.8E-1466110IPR001005SANT/Myb domain
CDDcd001673.12E-1068111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRNKCSTTA LKKGAWTEEE DTLLKRCIEK HGEGNWHKVP LRAGLNRCRK SCRLRWFNYL  60
HPNIKREEFS WDEIDLIIKM HKLLGNRWSL IAARLPGRTA NDIKNRWNTH IYKSIQKKQV  120
IMKQQSADTE TTTTLKIKPI KPQPRTFSKM KTSNNSIEKN PTQCGDELHE KSMSEFEKEQ  180
SIKWWESLLL DEEDDKVTNS SSSGSKDDFA FDSFPFDGIV PNNEMGMCLD LNLWES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A1e-20131262118MYB3
3zqc_D1e-20131262118MYB3
3zqc_G1e-20131262118MYB3
3zqc_J1e-20131262118MYB3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064838.19e-69PREDICTED: transcription factor MYB114-like
SwissprotQ9FNV97e-60MY113_ARATH; Transcription factor MYB113
TrEMBLC4PAV29e-74C4PAV2_AQUFO; R2R3-myb transcription factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-59myb domain protein 113